tedana
stable
Contents:
Installation
About multi-echo fMRI
Using tedana from the command line
tedana’s denoising approach
Outputs of tedana
FAQ
Understanding and building a component selection process
Support and communication
Contributing to tedana
The tedana roadmap
API
Denoising Data with Components
tedana
Index
Edit on GitHub
Index
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A
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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T
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W
_
__init__() (ComponentSelector method)
(CustomEncoder method)
(InputHarvester method)
(OutputGenerator method)
A
accepted_comps_ (ComponentSelector property)
add_decomp_prefix() (in module tedana.io)
add_df_to_file() (OutputGenerator method)
add_manual() (ComponentSelector method)
andb() (in module tedana.utils)
are_all_components_accepted_or_rejected() (ComponentSelector method)
are_only_necessary_metrics_used() (ComponentSelector method)
automatic_selection() (in module tedana.selection.tedica)
C
calc_extend_factor() (in module tedana.selection.selection_nodes)
calc_kappa_elbow() (in module tedana.selection.selection_nodes)
calc_max_good_meanmetricrank() (in module tedana.selection.selection_nodes)
calc_median() (in module tedana.selection.selection_nodes)
calc_revised_meanmetricrank_guesses() (in module tedana.selection.selection_nodes)
calc_rho_elbow() (in module tedana.selection.selection_nodes)
calc_varex_kappa_ratio() (in module tedana.selection.selection_nodes)
calc_varex_thresh() (in module tedana.selection.selection_nodes)
calculate_betas() (in module tedana.metrics.dependence)
calculate_dependence_metrics() (in module tedana.metrics.dependence)
calculate_f_maps() (in module tedana.metrics.dependence)
calculate_psc() (in module tedana.metrics.dependence)
calculate_varex() (in module tedana.metrics.dependence)
calculate_varex_norm() (in module tedana.metrics.dependence)
calculate_weights() (in module tedana.metrics.dependence)
calculate_z_maps() (in module tedana.metrics.dependence)
change_comptable_classifications() (in module tedana.selection.selection_utils)
check_null() (ComponentSelector method)
clean_dataframe() (in module tedana.selection.selection_utils)
ComponentSelector (class in tedana.selection.component_selector)
comptable_classification_changer() (in module tedana.selection.selection_utils)
compute_countnoise() (in module tedana.metrics.dependence)
compute_countsignal() (in module tedana.metrics.dependence)
compute_dice() (in module tedana.metrics.dependence)
compute_signal_minus_noise_t() (in module tedana.metrics.dependence)
compute_signal_minus_noise_z() (in module tedana.metrics.dependence)
computefeats2() (in module tedana.stats)
confirm_metrics_exist() (in module tedana.selection.selection_utils)
CustomEncoder (class in tedana.io)
D
dec_classification_doesnt_exist() (in module tedana.selection.selection_nodes)
dec_left_op_right() (in module tedana.selection.selection_nodes)
dec_reclassify_high_var_comps() (in module tedana.selection.selection_nodes)
dec_variance_lessthan_thresholds() (in module tedana.selection.selection_nodes)
default() (CustomEncoder method)
denoise_ts() (in module tedana.io)
dice() (in module tedana.utils)
E
encode() (CustomEncoder method)
F
find_braces() (in module tedana.bibtex)
find_citations() (in module tedana.bibtex)
fit_decay() (in module tedana.decay)
fit_decay_ts() (in module tedana.decay)
G
generate_decision_table_score() (in module tedana.metrics.dependence)
generate_metrics() (in module tedana.metrics.collect)
get_coeffs() (in module tedana.stats)
get_description_references() (in module tedana.bibtex)
get_extend_factor() (in module tedana.selection.selection_utils)
get_fields() (in module tedana.io)
get_file_contents() (InputHarvester method)
get_file_path() (InputHarvester method)
get_metadata() (in module tedana.metrics.collect)
get_name() (OutputGenerator method)
get_spectrum() (in module tedana.utils)
getelbow() (in module tedana.selection.selection_utils)
getelbow_cons() (in module tedana.selection.selection_utils)
getfbounds() (in module tedana.stats)
gscontrol_raw() (in module tedana.gscontrol)
I
ica_reclassify_workflow() (in module tedana.workflows)
index_bibtex_identifiers() (in module tedana.bibtex)
InputHarvester (class in tedana.io)
item_separator (CustomEncoder attribute)
iterencode() (CustomEncoder method)
K
kappa_elbow_kundu() (in module tedana.selection.selection_utils)
key_separator (CustomEncoder attribute)
kundu_tedpca() (in module tedana.selection.tedpca)
L
likely_bold_comps_ (ComponentSelector property)
load_config() (in module tedana.selection.component_selector)
load_data() (in module tedana.io)
load_json() (in module tedana.io)
loaders (InputHarvester attribute)
log_classification_counts() (in module tedana.selection.selection_utils)
log_decision_tree_step() (in module tedana.selection.selection_utils)
M
make_adaptive_mask() (in module tedana.utils)
make_optcom() (in module tedana.combine)
manual_classify() (in module tedana.selection.selection_nodes)
millisec2sec() (in module tedana.utils)
minimum_image_regression() (in module tedana.gscontrol)
module
tedana.bibtex
tedana.combine
tedana.decay
tedana.decomposition
tedana.gscontrol
tedana.io
tedana.metrics
tedana.metrics.collect
tedana.metrics.dependence
tedana.selection
tedana.selection.selection_nodes
tedana.selection.selection_utils
tedana.selection.tedica
tedana.selection.tedpca
tedana.stats
tedana.utils
tedana.workflows
N
n_accepted_comps_ (ComponentSelector property)
n_comps_ (ComponentSelector property)
n_likely_bold_comps_ (ComponentSelector property)
new_nii_like() (in module tedana.io)
O
OutputGenerator (class in tedana.io)
P
prep_data_for_json() (in module tedana.io)
R
reduce_idx() (in module tedana.bibtex)
reduce_references() (in module tedana.bibtex)
register_input() (OutputGenerator method)
registry (InputHarvester property)
rejected_comps_ (ComponentSelector property)
reshape_niimg() (in module tedana.utils)
rho_elbow_kundu_liberal() (in module tedana.selection.selection_utils)
S
save_file() (OutputGenerator method)
save_img() (OutputGenerator method)
save_json() (OutputGenerator method)
save_self() (OutputGenerator method)
save_tsv() (OutputGenerator method)
sec2millisec() (in module tedana.utils)
select() (ComponentSelector method)
selectcomps2use() (in module tedana.selection.selection_utils)
split_ts() (in module tedana.io)
T
t2smap_workflow() (in module tedana.workflows)
tedana.bibtex
module
tedana.combine
module
tedana.decay
module
tedana.decomposition
module
tedana.gscontrol
module
tedana.io
module
tedana.metrics
module
tedana.metrics.collect
module
tedana.metrics.dependence
module
tedana.selection
module
tedana.selection.selection_nodes
module
tedana.selection.selection_utils
module
tedana.selection.tedica
module
tedana.selection.tedpca
module
tedana.stats
module
tedana.utils
module
tedana.workflows
module
tedana_workflow() (in module tedana.workflows)
tedica() (in module tedana.decomposition)
tedpca() (in module tedana.decomposition)
threshold_map() (in module tedana.metrics.dependence)
(in module tedana.utils)
threshold_to_match() (in module tedana.metrics.dependence)
to_files() (ComponentSelector method)
TreeError (class in tedana.selection.component_selector)
U
unmask() (in module tedana.utils)
V
validate_tree() (in module tedana.selection.component_selector)
W
write_split_ts() (in module tedana.io)
writeresults() (in module tedana.io)
writeresults_echoes() (in module tedana.io)
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